{
  "_id": "6a1edbecb401979e7340fa24",
  "Package": "EMbC",
  "Type": "Package",
  "Title": "Expectation-Maximization Binary Clustering",
  "Version": "2.0.4",
  "Date": "2023-09-26",
  "Author": "Joan Garriga, John R.B. Palmer, Aitana Oltra, Frederic\nBartumeus",
  "Maintainer": "Joan Garriga <jgarriga@ceab.csic.es>",
  "Description": "Unsupervised, multivariate, binary clustering for\nmeaningful annotation of data, taking into account the\nuncertainty in the data. A specific constructor for trajectory\nanalysis in movement ecology yields behavioural annotation of\ntrajectories based on estimated local measures of velocity and\nturning angle, eventually with solar position covariate as a\ndaytime indicator, (\"Expectation-Maximization Binary Clustering\nfor Behavioural Annotation\").",
  "URL": "<doi:10.1371/journal.pone.0151984>",
  "License": "GPL-3 | file LICENSE",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-20 08:34:56 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev",
  "Repository": "https://jgarriga65.r-universe.dev",
  "Date/Publication": "2023-10-03 15:30:52 UTC",
  "RemoteUrl": "https://github.com/cran/EMbC",
  "RemoteRef": "HEAD",
  "RemoteSha": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
  "MD5sum": "2ae6b20c004bf69b5af0d317b8253426",
  "_user": "jgarriga65",
  "_type": "src",
  "_file": "EMbC_2.0.4.tar.gz",
  "_fileid": "8690e2a3fc3b308a694d14aa6b26e94323e3b97b6c0de2f8ee83ee69f6b84b3c",
  "_filesize": 2921199,
  "_sha256": "8690e2a3fc3b308a694d14aa6b26e94323e3b97b6c0de2f8ee83ee69f6b84b3c",
  "_created": "2026-05-20T08:34:56.000Z",
  "_published": "2026-06-02T13:34:36.902Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79082955481,
      "time": 152,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7105172802"
    },
    {
      "job": 79082955323,
      "time": 153,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7105172741"
    },
    {
      "job": 79082956176,
      "time": 156,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105174091"
    },
    {
      "job": 79082955627,
      "time": 155,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105173511"
    },
    {
      "job": 79082955963,
      "time": 198,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7105176246"
    },
    {
      "job": 79082955368,
      "time": 296,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7105212780"
    },
    {
      "job": 79082955941,
      "time": 186,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105171346"
    },
    {
      "job": 79082955294,
      "time": 481,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105269077"
    },
    {
      "job": 79082954070,
      "time": 228,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7105119170"
    },
    {
      "job": 79082954078,
      "time": 129,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7359184342"
    },
    {
      "job": 79082955182,
      "time": 138,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7105167964"
    },
    {
      "job": 79082955546,
      "time": 133,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7105165871"
    },
    {
      "job": 79082955474,
      "time": 162,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105175823"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/EMbC",
  "_commit": {
    "id": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
    "author": "Joan Garriga <jgarriga@ceab.csic.es>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.0.4\n",
    "time": 1696347052
  },
  "_maintainer": {
    "name": "Joan Garriga",
    "email": "jgarriga@ceab.csic.es",
    "login": "jgarriga65",
    "orcid": "0000-0002-4561-7835",
    "description": "",
    "uuid": 61781930
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.11.0",
      "role": "Imports"
    },
    {
      "package": "sp",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "mnormt",
      "role": "Imports"
    },
    {
      "package": "suntools",
      "role": "Imports"
    },
    {
      "package": "move",
      "role": "Suggests"
    },
    {
      "package": "sf",
      "role": "Suggests"
    },
    {
      "package": "rgl",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "jgarriga65",
      "count": 7,
      "uuid": 61781930
    }
  ],
  "_userbio": {
    "uuid": 61781930,
    "type": "user",
    "name": "jgarriga65"
  },
  "_downloads": {
    "count": 360,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EMbC"
  },
  "_mentions": 10,
  "_searchresults": 47,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EMbC.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "jgarriga65",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.9.3",
      "date": "2015-07-28"
    },
    {
      "version": "1.9.4",
      "date": "2016-03-21"
    },
    {
      "version": "2.0.0",
      "date": "2016-11-10"
    },
    {
      "version": "2.0.1",
      "date": "2018-05-07"
    },
    {
      "version": "2.0.2",
      "date": "2019-09-04"
    },
    {
      "version": "2.0.3",
      "date": "2019-12-16"
    },
    {
      "version": "2.0.4",
      "date": "2023-10-03"
    }
  ],
  "_exports": [
    "bkml",
    "bmap",
    "chkp",
    "cnfm",
    "embc",
    "lblp",
    "lkhp",
    "pkml",
    "pmap",
    "rlbl",
    "sct3",
    "sctr",
    "setc",
    "slct",
    "smth",
    "stbc",
    "stts",
    "varp",
    "view"
  ],
  "_datasets": [
    {
      "name": "expth",
      "title": "Synthetic path used in the examples",
      "object": "expth",
      "class": [
        "data.frame"
      ],
      "fields": [
        "dTm",
        "lon",
        "lat",
        "lbl"
      ],
      "rows": 600,
      "table": true,
      "tojson": true
    },
    {
      "name": "x2d",
      "title": "Synthetic 2D object used in the examples",
      "object": "x2d",
      "class": [
        "x2d"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "EMbC_pckg",
      "title": "Expectation-Maximization binary Clustering package.",
      "topics": [
        "EMbC-package",
        "EMbC"
      ]
    },
    {
      "page": "binClst_Instance",
      "title": "binClst Instance definition",
      "topics": [
        "binClst_instance"
      ]
    },
    {
      "page": "binClst-class",
      "title": "Binary Clustering Class",
      "topics": [
        "binClst-class"
      ]
    },
    {
      "page": "binClstPath_Instance",
      "title": "binClstPath Instance definition",
      "topics": [
        "binClstPath_instance"
      ]
    },
    {
      "page": "binClstPath-class",
      "title": "Binary Clustering Path Class",
      "topics": [
        "binClstPath-class"
      ]
    },
    {
      "page": "binClstStck-class",
      "title": "Binary Clustering Stack Class",
      "topics": [
        "binClstStck-class"
      ]
    },
    {
      "page": "bkml",
      "title": "Generate a burstwise .kml file of a binClstPath_instance.",
      "topics": [
        "bkml",
        "bkml,binClstPath-method"
      ]
    },
    {
      "page": "bmap",
      "title": "Generate an HTML burstwise webmap of a binClstPath_instance.",
      "topics": [
        "bmap",
        "bmap,binClstPath-method"
      ]
    },
    {
      "page": "chkp",
      "title": "Check labeling profile",
      "topics": [
        "chkp",
        "chkp,binClst-method"
      ]
    },
    {
      "page": "cnfm",
      "title": "Confusion matrix",
      "topics": [
        "cnfm",
        "cnfm,binClst,binClst-method",
        "cnfm,binClst,numeric-method",
        "cnfm,binClstPath,missing-method",
        "cnfm,binClstStck,missing-method"
      ]
    },
    {
      "page": "embc",
      "title": "General pourpose multivariate binary Clustering (EMbC)",
      "topics": [
        "embc"
      ]
    },
    {
      "page": "expth",
      "title": "Synthetic path used in the examples",
      "topics": [
        "expth"
      ]
    },
    {
      "page": "lblp",
      "title": "labeling profile plot",
      "topics": [
        "lblp",
        "lblp,binClst,binClst-method",
        "lblp,binClst,missing-method",
        "lblp,binClst,numeric-method",
        "lblp,binClstStck,missing-method"
      ]
    },
    {
      "page": "lkhp",
      "title": "Likelihood profile plots",
      "topics": [
        "lkhp",
        "lkhp,binClst-method",
        "lkhp,list-method"
      ]
    },
    {
      "page": "pkml",
      "title": "Generate a pointwise .kml file of a binClstPath_instance",
      "topics": [
        "pkml",
        "pkml,binClstPath-method"
      ]
    },
    {
      "page": "pmap",
      "title": "Generate an HTML pointwise webmap of a binClstPath_instance.",
      "topics": [
        "pmap",
        "pmap,binClstPath-method"
      ]
    },
    {
      "page": "rlbl",
      "title": "Manual relabeling of clusters.",
      "topics": [
        "rlbl",
        "rlbl,binClst-method"
      ]
    },
    {
      "page": "sct3",
      "title": "Dynamic 3D-scatterplot",
      "topics": [
        "sct3",
        "sct3,binClst-method"
      ]
    },
    {
      "page": "sctr",
      "title": "Clustering 2D-scatterplot",
      "topics": [
        "sctr",
        "sctr,binClst-method",
        "sctr,binClstStck-method"
      ]
    },
    {
      "page": "setc",
      "title": "Sets binClst color palette .",
      "topics": [
        "setc"
      ]
    },
    {
      "page": "slct",
      "title": "Select a single path from a 'binClstStck' instance.",
      "topics": [
        "slct"
      ]
    },
    {
      "page": "smth",
      "title": "Posterior smoothing of single local labels.",
      "topics": [
        "smth",
        "smth,binClst-method",
        "smth,binClstStck-method"
      ]
    },
    {
      "page": "stbc",
      "title": "speed/turn bivariate binary Clustering.",
      "topics": [
        "stbc"
      ]
    },
    {
      "page": "stts",
      "title": "Clustering statistics.",
      "topics": [
        "stts",
        "stts,binClst-method",
        "stts,binClstStck-method"
      ]
    },
    {
      "page": "varp",
      "title": "Variables' profile plots",
      "topics": [
        "varp",
        "varp,binClstPath-method",
        "varp,matrix-method"
      ]
    },
    {
      "page": "view",
      "title": "Path fast view",
      "topics": [
        "view",
        "view,binClstPath-method",
        "view,data.frame-method"
      ]
    },
    {
      "page": "x2d",
      "title": "Synthetic 2D object used in the examples",
      "topics": [
        "x2d"
      ]
    }
  ],
  "_rundeps": [
    "class",
    "classInt",
    "DBI",
    "e1071",
    "KernSmooth",
    "lattice",
    "MASS",
    "mnormt",
    "proxy",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "s2",
    "sf",
    "sp",
    "suntools",
    "units",
    "wk"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "EMbC_qckref.Rmd",
      "filename": "EMbC_qckref.html",
      "title": "The EMbC R-package: quick reference",
      "author": "J.Garriga; F.Bartumeus ICREA Movement Ecology Laboratory (CEAB-CSIC) jgarriga@ceab.csic.es",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The EMbC Algorithm",
        "The EMbC R-package",
        "Working Environment",
        "Basic structure",
        "Class: binClst",
        "Binary clustering",
        "Slots",
        "Likelihood Plot",
        "Clustering parameters",
        "Clustering scatter-plot",
        "Clustering validation",
        "Class: binClstPath",
        "Bivariate velocity-turn clustering",
        "Basic functionality",
        "Labeling profile",
        "Fast visualization of the annotated trajectory",
        "Detailed inspection of the annotated trajectory",
        "Plot intermediate variables",
        "Using Move objects from the R-package move",
        "Trivariate clustering: including a daytime covariate",
        "Trivariate clustering scatter plot",
        "Smoothing",
        "Relabeling",
        "Validation versus external information",
        "Class: binClstStck",
        "binClstStck slots",
        "Select an individual out of the stack",
        "Comparing individual's behavior with population's average behavior",
        "References"
      ],
      "created": "2015-06-30",
      "modified": "2023-10-03 15:30:52",
      "commits": 4
    }
  ],
  "_score": 3.6720978579357175,
  "_indexed": true,
  "_nocasepkg": "embc",
  "_universes": [
    "jgarriga65"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.4",
      "date": "2026-05-20T08:37:25.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "6025eb597465b0eb39a218cb8ac455bd092b51c3ce90b088c7b2e22ecdb1b5f0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.4",
      "date": "2026-05-20T08:37:21.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "579ff346dae149282020b04b7b8cbb6907e4387e5b3a8cffa484582e5783d3eb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.4",
      "date": "2026-05-20T08:37:29.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "00bf8026a7d923413c443bc5cb2f5f5b1518bb2eba1e302fac65d2838356acf0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.4",
      "date": "2026-05-20T08:37:26.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "8d977c87fb497164fe6bdd72b00c1e70df0144094ef438e8cdaedd739718ce6f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.4",
      "date": "2026-05-20T08:37:39.000Z",
      "arch": "aarch64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "96b6516e2d483d9bff426e9a82372f3ac5d9758dd698d85f9b3f522b74f219b7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.4",
      "date": "2026-05-20T08:38:48.000Z",
      "arch": "x86_64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "bf894230a3e15d208ea331f97a90e88fde9af4e1f60e3b3597634c2191e03882",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.4",
      "date": "2026-05-20T08:37:12.000Z",
      "arch": "aarch64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "ed9730aaaba0a85a9115df759b2f38e7f335fb6f6a2fc4accf4dc28b8d2078ad",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.4",
      "date": "2026-05-20T08:40:22.000Z",
      "arch": "x86_64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "4a4c82b49611df6890cdb6b38fdfbe604a5242c37f32bb7082f2af26531ec2f1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.4",
      "date": "2026-05-20T08:36:39.000Z",
      "arch": "x86_64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "6add34c7d59e50d9ec8842e0e9ca52aa05a8dbea01c1d63358ee83fe1a2ffbd2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.4",
      "date": "2026-05-20T08:36:38.000Z",
      "arch": "x86_64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "50db78663f124890b0d74dc5937ac30d1c117b1d7db9b5ae5d13114dd20b3894",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.4",
      "date": "2026-05-20T08:36:33.000Z",
      "arch": "x86_64",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "0f83c1809966c0dacee8f61ca1f1c5c7e6d0d3a11afcad2c9363f0b5fa25fd33",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.4",
      "date": "2026-06-02T13:34:04.000Z",
      "arch": "emscripten",
      "commit": "8c4a8b218b40b3f52547e891fa3fc7201d1d43ae",
      "fileid": "dab1c3cbcbacad461dafd3badb912c9649a1d7e40871d1e1449cfdbbda08d616",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jgarriga65/actions/runs/26150986463"
    }
  ]
}